PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G15710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YC | ||||||||
Protein Properties | Length: 258aa MW: 28268.5 Da PI: 5.1115 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.8 | 6e-19 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v r fdfl+++v + ONIVA11G15710.1 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVRRYSSFDFLTEVVNK 86 579************************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60 TLNSFHLKQC VRRYSSFDFL TEVVNKVPDL GGADSCGDDR ALPRRRKALP NGSDPENEES 120 RSSKMAVRSA NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFADQ GEALPGEETV 180 PETIHGTESI PPSTHPPAEA PSAAEIPAPN PKVEEAKNDD HQPDWPMPDA IGNIGVGPSG 240 FGHLTVQVDE DEDYDNED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 107 | PRRRK |
2 | 135 | 144 | RGRGRGRGRG |
3 | 135 | 145 | RGRGRGRGRGR |
4 | 137 | 146 | RGRGRGRGRG |
5 | 137 | 147 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-53 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA11G15710.1 |