PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G03830.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 442aa MW: 50037.1 Da PI: 6.5088

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G03830.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.8	5.2e-27	114	210	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d ONIVA11G03830.1 114 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 207 7*******************8744455667777******************************************55********* PP trihelix 84 qle 86 +++ ONIVA11G03830.1 208 HMD 210 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI 60 SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV 120 KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL 180 NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR KILNSKHLFY EEMCSYHNNN 240 RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEGNE EEHRAVDTNI 300 RGPSMHKRMW HVVDYGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGCDL ALVQKDLALK 360 AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KREFTLKLGV 420 LFLTMNAEVK SKCGGLASQM AM

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI  60
SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV  120
KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR KILNSKHLFY EEMCSYHNNN  240
RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEGNE EEHRAVDTNI  300
RGPSMHKRMW HVVDYGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGCDL ALVQKDLALK  360
AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KREFTLKLGV  420
LFLTMNAEVK SKCGGLASQM AM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	8e-91	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G03830.1