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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G01800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 256aa MW: 28454.5 Da PI: 10.0226 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40 | 9.6e-13 | 79 | 136 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ ++ k+ + g ++++e Aa+a++ a++k++g ONIVA11G01800.1 79 SIYRGVTRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 136 57*****************99554433744577777********************98 PP | |||||||
2 | AP2 | 57 | 4.9e-18 | 179 | 231 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg+f+t eeAaka++ a+ +++g+ ONIVA11G01800.1 179 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 231 89****99**********988422...5*************************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTEKS TGKAKRPKKE 60 SKEVADPSSN GGGGGKRSSI YRGVTRHRWT GRFEAHLWDK NCSTSLQNKK KGRQGAYDSE 120 EAAARAYDLA ALKYWGPETV LNFPLEEYEK ERSEMEGVSR EEYLASLRRR SSGFSRGVSK 180 YRGVARHHHN GRWEARIGRV LGNKYLYLGT FDTQEEAAKA YDLAAIEYRG ANAVTNFDIS 240 CYLDQPQLLA QLQQEP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 5e-72 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA11G01800.1 |