PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G11830.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 408aa    MW: 42673.2 Da    PI: 5.6266
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G11830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.8e-141647839
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +r  tf++R++ ++K A+ELSvLCda+vav++
  ONIVA10G11830.1 16 KRAATFARRKESVMKMAKELSVLCDAQVAVVV 47
                     7999**************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MPRAKTPMGL IPFHKKRAAT FARRKESVMK MAKELSVLCD AQVAVVVGDP GGGAAEKAAW  60
ESEEGRSLTH REYLRGELRK QRAKLAKVRE EGAFKPWDDA LDGIAEETRK LHKYLSDKIE  120
AARARMEAMG LQLGDVDDNG VNGDDGGGLD LQQHVPPSAS DAKEFESVPV VHGGQYIGSS  180
SGGGGGGGGG GDIQMQTTPA ADGISFAEQY VPPPAVQPEH GIQYNAPMEG YPSQVPGNGL  240
PDLATGSIDV AAAAATTAPA RYPPTLDTGR HGSFLVAPRA QPLAFSTAGA DFINAPNNFL  300
TTGVSVSDYS VQSSGYGIGN QIDNAKQLLY QMQMQYPVGG TGGAEPSNTQ TQSPDLRSFS  360
NVVGDYSYTA AQSSANRLDQ MHHPVGGRGS TGGAAADPSD TQSKNRGS