PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G16860.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 428aa MW: 45139.4 Da PI: 8.0028

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G16860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.2e-40	115	191	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+ ++yhrrhkvCe hsk+pvv+vsg+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+qa ONIVA09G16860.1 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQA 191 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MDWDLKMPVS WDLAELEHNA VPNMAAAASA AEPGIAAVAA SRGAPGRPEC SVDLKLGGLG 60 EFGAADALKE PAAAAKAPVS SAAAAASVAK VPPSTSTLKR PRGGGGGGGG QCPSCAVDGC 120 KADLSKHRDY HRRHKVCEPH SKTPVVVVSG REMRFCQQCS RFHLLGEFDE AKRSCRKRLD 180 GHNRRRRKPQ ADSMSSGSFM TSQQGTRFAS FTPPRPEPSW PGIIKSEETP YYSHHHHPHP 240 VMTSRQPHFV GSPSSATTAA FSPKEGRRFP FLHEGDQISF GGGGGAAAAA TLEISVCQTT 300 VVAPPPPESS SSNKMFSSDG LTMATTTTTT AHHHHHHQIP MAQPLVPNLQ QQFGGSSPWF 360 ASSPAAAAVA GGGFACPSMD SEQQQQQQLN AVLVPGSNEN EMNYHGMFHV GGEGSSDGTS 420 PSLPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MDWDLKMPVS WDLAELEHNA VPNMAAAASA AEPGIAAVAA SRGAPGRPEC SVDLKLGGLG  60
EFGAADALKE PAAAAKAPVS SAAAAASVAK VPPSTSTLKR PRGGGGGGGG QCPSCAVDGC  120
KADLSKHRDY HRRHKVCEPH SKTPVVVVSG REMRFCQQCS RFHLLGEFDE AKRSCRKRLD  180
GHNRRRRKPQ ADSMSSGSFM TSQQGTRFAS FTPPRPEPSW PGIIKSEETP YYSHHHHPHP  240
VMTSRQPHFV GSPSSATTAA FSPKEGRRFP FLHEGDQISF GGGGGAAAAA TLEISVCQTT  300
VVAPPPPESS SSNKMFSSDG LTMATTTTTT AHHHHHHQIP MAQPLVPNLQ QQFGGSSPWF  360
ASSPAAAAVA GGGFACPSMD SEQQQQQQLN AVLVPGSNEN EMNYHGMFHV GGEGSSDGTS  420
PSLPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	189	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-39	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G16860.1