PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G12720.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YC

Protein Properties

Length: 425aa MW: 46812.9 Da PI: 4.7258

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G12720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	85.5	5.8e-27	21	121	1	98
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw ++ ie+++df +h++P+ar+kki +++ m++ + P++lsk celf+ el++r+w a++ +r + +dia+a+++t+ +df ONIVA09G12720.1 21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIASSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDF 114 68899765566******************************************************************************* PP NF-YC 92 lvdivpr 98 lvdi + ONIVA09G12720.1 115 LVDILHN 121 *9866 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MEQTLDVPRS LRLPTPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM 60 MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH 120 NHREKHKSTP CSTLTTKRCR LVDQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPISHY 180 IPFQYPSLSQ EVSTMMASAP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIIGCSS 240 PAVLASMMSP ALLDVAGASL NPPNSHSICT MNMINSTDPS GSSIGDINVA NQASLAPSEH 300 FNPAILQESS CPPFLYNNNN DTIVVVPEGV DISGTMDVAS DVAGLVINGQ EEEHERKTNV 360 EQNEIYESID IGIINASVVD GNKCSIRWDE LGTADDSLLD KFLEEFQARN DGVLHSGIVL 420 HEDHS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MEQTLDVPRS LRLPTPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH  120
NHREKHKSTP CSTLTTKRCR LVDQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSTMMASAP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIIGCSS  240
PAVLASMMSP ALLDVAGASL NPPNSHSICT MNMINSTDPS GSSIGDINVA NQASLAPSEH  300
FNPAILQESS CPPFLYNNNN DTIVVVPEGV DISGTMDVAS DVAGLVINGQ EEEHERKTNV  360
EQNEIYESID IGIINASVVD GNKCSIRWDE LGTADDSLLD KFLEEFQARN DGVLHSGIVL  420
HEDHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-22	NF-YC family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G12720.1