PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G00820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20151.1 Da PI: 4.8394 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.4 | 1.6e-12 | 8 | 49 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 e++ r+v fskRr+ ++K A+ELSv +a+va ++fs+ g ONIVA09G00820.1 8 MESEEARKVCFSKRRADLFKMASELSVHFNADVAAVVFSPAG 49 689999**********************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MVASRRKMES EEARKVCFSK RRADLFKMAS ELSVHFNADV AAVVFSPAGN RAYSIGDPSV 60 MDRFLSSLPA PAPPAETEPE PEVDWSVMEE LSRQCGQLQA MVDAHKARLE KAEEKLRESG 120 AAAWMMDLEA EVGRMAPEDV LALVTKLAVL RDGVAERAHE MLREALLAVA APTPTTTTTP 180 PPAGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-14 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA09G00820.1 |