PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G25500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 478aa    MW: 50101.4 Da    PI: 4.6726
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G25500.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-1653105155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+ a+ Aa+a++aa+++l+g
  ONIVA08G25500.1  53 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFDAADAAARAHDAAMLALRG 105
                      579******************9...6445*************************98 PP

2AP260.44.3e-19285337155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++ + grWv+e+r+p   g +  r ++g+f+taeeAa+a++aa+++l g
  ONIVA08G25500.1 285 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 337
                      579******************9...5445***********************9976 PP

Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MCTSKLEEIT GEWPPPALQA ASTTSSSEPC RRLSPPSSKR PAGRTKFHET RHPVFRGVRR  60
RGRAGRWVCE VRVPGRRGCR LWLGTFDAAD AAARAHDAAM LALRGRAAAC LNFADSAWLL  120
AVPPPATLRC AADVQRAVAR ALEDFEQRES SSSVFPLAID VVAEDAMSAT SEPSAASDDD  180
AVTSSSSTTD ADEEASPFEL DVVSDMGWSL YYASLAEGLL MEPPASGASS DDDDDAIVDS  240
GDIADNTTAM GQLMSSSATT AATATGPSSP KRPAGRTKFQ ETRHPVFRGV RRRGRAGRWV  300
CEVRVPGSRG DRLWVGTFDT AEEAARAHDA AMLALCGASA SLNFADSAWL LHVPRAPVAS  360
GHDQLPDVQR AASEAVAEFQ RRGSTAATAT ATSGDAASTA PPSSSPVLSP NDDNASSAST  420
PAVAAALDHG DMFGGMRADL YYASLAQGLL IEPPSPPTTA EGFCDDEGCG GAEMELWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-20ERF family protein