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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G25500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 478aa MW: 50101.4 Da PI: 4.6726 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.2e-16 | 53 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ + grWv+e+r+p g + r +lg+f+ a+ Aa+a++aa+++l+g ONIVA08G25500.1 53 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFDAADAAARAHDAAMLALRG 105 579******************9...6445*************************98 PP | |||||||
2 | AP2 | 60.4 | 4.3e-19 | 285 | 337 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ + grWv+e+r+p g + r ++g+f+taeeAa+a++aa+++l g ONIVA08G25500.1 285 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 337 579******************9...5445***********************9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence |
MCTSKLEEIT GEWPPPALQA ASTTSSSEPC RRLSPPSSKR PAGRTKFHET RHPVFRGVRR 60 RGRAGRWVCE VRVPGRRGCR LWLGTFDAAD AAARAHDAAM LALRGRAAAC LNFADSAWLL 120 AVPPPATLRC AADVQRAVAR ALEDFEQRES SSSVFPLAID VVAEDAMSAT SEPSAASDDD 180 AVTSSSSTTD ADEEASPFEL DVVSDMGWSL YYASLAEGLL MEPPASGASS DDDDDAIVDS 240 GDIADNTTAM GQLMSSSATT AATATGPSSP KRPAGRTKFQ ETRHPVFRGV RRRGRAGRWV 300 CEVRVPGSRG DRLWVGTFDT AEEAARAHDA AMLALCGASA SLNFADSAWL LHVPRAPVAS 360 GHDQLPDVQR AASEAVAEFQ RRGSTAATAT ATSGDAASTA PPSSSPVLSP NDDNASSAST 420 PAVAAALDHG DMFGGMRADL YYASLAQGLL IEPPSPPTTA EGFCDDEGCG GAEMELWS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA08G25500.1 |