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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G24560.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27916.1 Da PI: 10.1359 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 1e-31 | 33 | 83 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s ONIVA08G24560.2 33 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 83 79***********************************************96 PP | |||||||
2 | K-box | 15.4 | 7.8e-07 | 108 | 138 | 8 | 38 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhl 38 + e+++ + +++e+ kLk+++enLqr+qR+ ONIVA08G24560.2 108 NRESEQLKASRNEYLKLKARVENLQRTQRQT 138 467888999********************96 PP | |||||||
3 | K-box | 20.7 | 1.8e-08 | 135 | 168 | 67 | 100 |
K-box 67 skKnellleqieelqkkekelqeenkaLrkklee 100 ++++++l++q+ elq+ke++++e+n++Lr+klee ONIVA08G24560.2 135 QRQTKHLVDQLTELQRKEQMVSEANRCLRRKLEE 168 589****************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MAEKKKKKKK PQSLLVLTNW RSIGMGRGRV ELKRIENKIN RQVTFAKRRN GLLKKAYELS 60 VLCDAEVALI IFSNRGKLYE FCSTQSMTKT LEKYQKCSYA GPETAVQNRE SEQLKASRNE 120 YLKLKARVEN LQRTQRQTKH LVDQLTELQR KEQMVSEANR CLRRKLEESN HVRGQQVWEQ 180 GCNLIGYERQ PEVQQPLHGG NGFFHPLDAA GEPTLQIGYP AEHHEAMNSA CMNTYMPPWL 240 P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 11 | EKKKKKKKP |
2 | 4 | 10 | KKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 9e-69 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA08G24560.2 |