![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA08G24560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 279aa MW: 32233.1 Da PI: 9.9307 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 33 | 83 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s ONIVA08G24560.1 33 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 83 79***********************************************96 PP | |||||||
2 | K-box | 86.7 | 4.7e-29 | 108 | 206 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRh......llGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + e+++ + +++e+ kLk+++enLqr+qR+ llGedL+sL +keL++Le+qL++slk++R++++++l++q+ elq+ke++++e+n++Lr ONIVA08G24560.1 108 NRESEQLKASRNEYLKLKARVENLQRTQRQliawinLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLR 201 467888999********************733333368******************************************************** PP K-box 96 kklee 100 +klee ONIVA08G24560.1 202 RKLEE 206 **987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence |
MAEKKKKKKK PQSLLVLTNW RSIGMGRGRV ELKRIENKIN RQVTFAKRRN GLLKKAYELS 60 VLCDAEVALI IFSNRGKLYE FCSTQSMTKT LEKYQKCSYA GPETAVQNRE SEQLKASRNE 120 YLKLKARVEN LQRTQRQLIA WINLLGEDLD SLGIKELESL EKQLDSSLKH VRTTRTKHLV 180 DQLTELQRKE QMVSEANRCL RRKLEESNHV RGQQVWEQGC NLIGYERQPE VQQPLHGGNG 240 FFHPLDAAGE PTLQIGYPAE HHEAMNSACM NTYMPPWLP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 11 | EKKKKKKKP |
2 | 4 | 10 | KKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-89 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA08G24560.1 |