PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G24550.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 451aa MW: 46189.4 Da PI: 7.3168

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G24550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	112.8	2e-35	117	190	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p v+vsg+e rfCqq fh l+efDe+krsCr+rL++hn+rrrk+q+ ONIVA08G24550.1 117 CAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQ---FHLLQEFDEAKRSCRKRLDGHNRRRRKPQP 190 *****************************************9...*************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG 60 LGEFGGGGAQ PRVAVAGELA KGKGPAAAAT GAAAAASSAP AKRPRGAAAG QQQCPSCAVD 120 GCKEDLSKCR DYHRRHKVCE AHSKTPLVVV SGREMRFCQQ FHLLQEFDEA KRSCRKRLDG 180 HNRRRRKPQP DPMNSASYLA SQQGARFSPF ATPRPEASWT GMIKTEESPY YTHHQIPLGI 240 SSRQQHFVGS TSDGGRRFPF LQEGEISFGT GAGAGGVPMD QAAAAAAASV CQPLLKTVAP 300 PPPPHGGGGS GGGKMFSDGG LTQVLDSDCA LSLLSAPANS TAIDVGGGRV VVQPTEHIPI 360 AQPLISGLQF GGGGGSSAWF AARPHHQAAT GATATAVVVS TAGFSCPVVE SEQLNTVLSS 420 NDNEMNYNGM FHVGGEGSSD GTSSSLPFSW Q

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG  60
LGEFGGGGAQ PRVAVAGELA KGKGPAAAAT GAAAAASSAP AKRPRGAAAG QQQCPSCAVD  120
GCKEDLSKCR DYHRRHKVCE AHSKTPLVVV SGREMRFCQQ FHLLQEFDEA KRSCRKRLDG  180
HNRRRRKPQP DPMNSASYLA SQQGARFSPF ATPRPEASWT GMIKTEESPY YTHHQIPLGI  240
SSRQQHFVGS TSDGGRRFPF LQEGEISFGT GAGAGGVPMD QAAAAAAASV CQPLLKTVAP  300
PPPPHGGGGS GGGKMFSDGG LTQVLDSDCA LSLLSAPANS TAIDVGGGRV VVQPTEHIPI  360
AQPLISGLQF GGGGGSSAWF AARPHHQAAT GATATAVVVS TAGFSCPVVE SEQLNTVLSS  420
NDNEMNYNGM FHVGGEGSSD GTSSSLPFSW Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	188	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-38	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G24550.1