PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G22940.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 1140aa MW: 124461 Da PI: 7.6357

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G22940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.7e-40	186	263	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl++ak+yhrrhkvCe+h k++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ ONIVA08G22940.1 186 MCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 263 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1140 aa Download sequence
MQREVGPQVA PPMFLHQIQP LPPHATAAKK RGNPWPAAAV AAAEAKGGGN WNPRMWDWDS 60 RALTAKPSSD ALRVNAGLSH HQQQQQQSPP AAAKAAEALR QGGGGSGGLN LQLGLREDAA 120 TPMDVSPAAT TVSSSPSPPA SSAPAQEPVV RPSKRVRSGS PGSASGGGGG GGGGGNSGGS 180 GGSYPMCQVD DCRADLTNAK DYHRRHKVCE IHGKTTKALV GNQMQRFCQQ CSRFHPLSEF 240 DEGKRSCRRR LAGHNRRRRK TQPTDVASQL LLPGNQENAA NRTQDIVNLI TVIARLQGSN 300 VGKLPSIPPI PDKDNLVQII SKINSINNGN SASKSPPSEA VDLNASHSQQ QDSVQRTTNG 360 FEKQTNGLDK QTNGFDKQAD GFDKQAVPST MDLLAVLSTA LATSNPDSNT SQSQGSSDSS 420 GNNKSKSQST EPANVVNSHE KSIRVFSATR KNDALERSPE MYKQPDQETP PYLSLRLFGS 480 TEEDVPCKMD TANKYLSSES SNPLDERSPS SSPPVTHKFF PIRSVDEDAR IADYGEDIAT 540 VEVSTSRAWR APPLELFKDS ERPIENGSPP NPAYQSCYTS TSCSDHSPST SNSDGQDRTG 600 RIIFKLFGKE PSTIPGNLRG EIVNWLKHSP NEMEGYIRPG CLVLSMYLSM PAIAWDELEE 660 NLLQRVNTLV QGSDLDFWRK GRFLVRTDAQ LVSYKDGATR LSKSWRTWNT PELTFVSPIA 720 VVGGRKTSLI LKGRNLTIPG TQIHCTSTGK YISKEVLCSA YPGTIYDDSG VETFDLPGEP 780 HLILGRYFIE VENRFRGNSF PVIIANSSVC QELRSLEAEL EGSQFVDGSS DDQAHDARRL 840 KPKDEVLHFL NELGWLFQKA AASTSAEKSD SSGLDLMYFS TARFRYLLLF SSERDWCSLT 900 KTLLEILAKR SLASDELSQE TLEMLSEIHL LNRAVKRKSS HMARLLVQFV VVCPDDSKLY 960 PFLPNVAGPG GLTPLHLAAS IEDAVDIVDA LTDDPQQIGL SCWHSALDDD GQSPETYAKL 1020 RNNNAYNELV AQKLVDRKNN QVTIMVGKEE IHMDQSGNVG EKNKSAIQAL QIRSCNQCAI 1080 LDAGLLRRPM HSRGLLARPY IHSMLAIAAV CVCVCVFMRA LLRFNSGRSF KWERLDFGTI

Sequence ? help Back to Top

Protein Sequence Length: 1140 aa Download sequence

MQREVGPQVA PPMFLHQIQP LPPHATAAKK RGNPWPAAAV AAAEAKGGGN WNPRMWDWDS  60
RALTAKPSSD ALRVNAGLSH HQQQQQQSPP AAAKAAEALR QGGGGSGGLN LQLGLREDAA  120
TPMDVSPAAT TVSSSPSPPA SSAPAQEPVV RPSKRVRSGS PGSASGGGGG GGGGGNSGGS  180
GGSYPMCQVD DCRADLTNAK DYHRRHKVCE IHGKTTKALV GNQMQRFCQQ CSRFHPLSEF  240
DEGKRSCRRR LAGHNRRRRK TQPTDVASQL LLPGNQENAA NRTQDIVNLI TVIARLQGSN  300
VGKLPSIPPI PDKDNLVQII SKINSINNGN SASKSPPSEA VDLNASHSQQ QDSVQRTTNG  360
FEKQTNGLDK QTNGFDKQAD GFDKQAVPST MDLLAVLSTA LATSNPDSNT SQSQGSSDSS  420
GNNKSKSQST EPANVVNSHE KSIRVFSATR KNDALERSPE MYKQPDQETP PYLSLRLFGS  480
TEEDVPCKMD TANKYLSSES SNPLDERSPS SSPPVTHKFF PIRSVDEDAR IADYGEDIAT  540
VEVSTSRAWR APPLELFKDS ERPIENGSPP NPAYQSCYTS TSCSDHSPST SNSDGQDRTG  600
RIIFKLFGKE PSTIPGNLRG EIVNWLKHSP NEMEGYIRPG CLVLSMYLSM PAIAWDELEE  660
NLLQRVNTLV QGSDLDFWRK GRFLVRTDAQ LVSYKDGATR LSKSWRTWNT PELTFVSPIA  720
VVGGRKTSLI LKGRNLTIPG TQIHCTSTGK YISKEVLCSA YPGTIYDDSG VETFDLPGEP  780
HLILGRYFIE VENRFRGNSF PVIIANSSVC QELRSLEAEL EGSQFVDGSS DDQAHDARRL  840
KPKDEVLHFL NELGWLFQKA AASTSAEKSD SSGLDLMYFS TARFRYLLLF SSERDWCSLT  900
KTLLEILAKR SLASDELSQE TLEMLSEIHL LNRAVKRKSS HMARLLVQFV VVCPDDSKLY  960
PFLPNVAGPG GLTPLHLAAS IEDAVDIVDA LTDDPQQIGL SCWHSALDDD GQSPETYAKL  1020
RNNNAYNELV AQKLVDRKNN QVTIMVGKEE IHMDQSGNVG EKNKSAIQAL QIRSCNQCAI  1080
LDAGLLRRPM HSRGLLARPY IHSMLAIAAV CVCVCVFMRA LLRFNSGRSF KWERLDFGTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G22940.1