PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G22610.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 418aa MW: 42422.8 Da PI: 9.2965

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G22610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.8e-42	103	180	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adls +k+y+ rhkvC +hskap v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrr++q+ ONIVA08G22610.1 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRRPQT 180 6**************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MEMASGGGAA AAAGGGVGGS GGGGGGGDEH RQLHGLKFGK KIYFEDAAAA AGGGGTGSGS 60 GSASAAPPSS SSKAAGGGRG GGGKNKGKGV AAAAPPPPPP PPRCQVEGCG ADLSGIKNYY 120 CRHKVCFMHS KAPRVVVAGL EQRFCQQCSR FHLLPEFDQG KRSCRRRLAG HNERRRRPQT 180 PLASRYGRLA ASVGEEHRRF RSFTLDFSYP RVPSSVRNAW PAIQPGDRIS GGIQWHGNLA 240 PHGHSSAVAG YGANTYSGQG SSSSGPPVFA GPNLPPGGCL AGVGAATDSS CALSLLSTQP 300 WDTTTHSAAA SHNQAAAMST TTSFDGNPVA PSAMAGSYMA PSPWTGSRGH EGGGRSVAHQ 360 LPHEVSLDEV HPGPSHHAHF SGELELALQG NGPAPAPRID PGSGSTFDQT SNTMDWSL

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MEMASGGGAA AAAGGGVGGS GGGGGGGDEH RQLHGLKFGK KIYFEDAAAA AGGGGTGSGS  60
GSASAAPPSS SSKAAGGGRG GGGKNKGKGV AAAAPPPPPP PPRCQVEGCG ADLSGIKNYY  120
CRHKVCFMHS KAPRVVVAGL EQRFCQQCSR FHLLPEFDQG KRSCRRRLAG HNERRRRPQT  180
PLASRYGRLA ASVGEEHRRF RSFTLDFSYP RVPSSVRNAW PAIQPGDRIS GGIQWHGNLA  240
PHGHSSAVAG YGANTYSGQG SSSSGPPVFA GPNLPPGGCL AGVGAATDSS CALSLLSTQP  300
WDTTTHSAAA SHNQAAAMST TTSFDGNPVA PSAMAGSYMA PSPWTGSRGH EGGGRSVAHQ  360
LPHEVSLDEV HPGPSHHAHF SGELELALQG NGPAPAPRID PGSGSTFDQT SNTMDWSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	GGGRGGGG
2	77	84	GGGRGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	7e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G22610.1