PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G21050.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 367aa    MW: 39632.5 Da    PI: 4.5423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G21050.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29e-28958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nr+vtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  ONIVA08G21050.2  9 KRIENTTNRHVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MGRVKLPIKR IENTTNRHVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR  60
RGVEDVILRY MNLSEHDRGE AIQNREYLIS MLQRLKRESD MATQLANPGA LNEKIEEIQQ  120
EIYSSQQQLQ ITEDRLRMFE PDPAAFGTSS EVDGCEKYLM ELLTRVVERK NNLLSSHMAP  180
FDATTAAMQG ADGTQMYVSQ ADGLATFGGD AAMWGPDGGA DPGHPMFSAS DPLIYLRDHD  240
VYDANSQVAG LHGGDPCAAG GAAAAAAAVG CVDDDVAGGH AAAADAWRQA YTCTELLSTL  300
IPTTPFPLMP HCLGPEDQYL SMEHGMVAAA QEPVEASTAS CSYVPSDENS GTPVMAYESN  360
PPPANIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-65MIKC_MADS family protein