PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G06090.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YC

Protein Properties

Length: 402aa MW: 44936.4 Da PI: 5.2695

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G06090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	151.4	1.7e-47	231	334	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q +e++t+fk +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifdf ONIVA08G06090.1 231 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFDF 324 89****9777799*************************************************************************** PP NF-YC 92 lvdivprdel 101 lvdi+ d++ ONIVA08G06090.1 325 LVDIITDDKM 334 ***99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MLVKYEDLDG DVVQVDLMES KSAYGGAIGV WTPMRESWGS ASAATPARPF VTNNVIPANW 60 SRIAPSLPPS PLPRRPRSLR ARPLLRLSRL GLFLCPRLPD ATLAALTAAP SISAVDISCS 120 RGFLLLRFCV GFWGGVLAME MILQQLHRST SLEMDPHSHK KAHEGLIGDN PDAYAVTTYQ 180 PVLMVEPSAA AAFPPAPQVA PAYPVNPMQL PEHQQHAIQQ VQQLQQQQKE QLQAFWADQM 240 AEVEQMTEFK LPNLPLARIK KIMKADEDVK MIAGEAPALF AKACEMFILD MTLRSWQHTE 300 EGRRRTLQRS DVEAVIKKTD IFDFLVDIIT DDKMKDDGMG FQAASMVSPY TSGGMGFSFD 360 LYPNQHHLAY MWPPQEQQEQ WPPQEQQEQK QKQDSDGGGQ DE

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MLVKYEDLDG DVVQVDLMES KSAYGGAIGV WTPMRESWGS ASAATPARPF VTNNVIPANW  60
SRIAPSLPPS PLPRRPRSLR ARPLLRLSRL GLFLCPRLPD ATLAALTAAP SISAVDISCS  120
RGFLLLRFCV GFWGGVLAME MILQQLHRST SLEMDPHSHK KAHEGLIGDN PDAYAVTTYQ  180
PVLMVEPSAA AAFPPAPQVA PAYPVNPMQL PEHQQHAIQQ VQQLQQQQKE QLQAFWADQM  240
AEVEQMTEFK LPNLPLARIK KIMKADEDVK MIAGEAPALF AKACEMFILD MTLRSWQHTE  300
EGRRRTLQRS DVEAVIKKTD IFDFLVDIIT DDKMKDDGMG FQAASMVSPY TSGGMGFSFD  360
LYPNQHHLAY MWPPQEQQEQ WPPQEQQEQK QKQDSDGGGQ DE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	310	RRTLQRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	4e-49	NF-YC family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G06090.1