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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G04140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 273aa MW: 29540.8 Da PI: 6.6917 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.3e-11 | 77 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g ONIVA08G04140.1 77 SRYHGVTRLKWSGKFEAHLWDnSSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 133 79*******************55558777778888.999999**************98 PP | |||||||
2 | AP2 | 50.1 | 6.7e-16 | 178 | 232 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++k +grW A+I e + k ++lg+f t+ eAa+a++ a+ +l+g+ ONIVA08G04140.1 178 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 232 67*****999.9******99953323..36**********99*************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG 60 GKLVAETMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNSS QVEGRKRKGK HGSYVTEENA 120 ARAHDLAALK YWGAGPNTKL NFNVSDYEKE IERMKTMSQD EFVVYIRRQS SCFSRGTSSY 180 RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR GAHAVTNFDI 240 SNYCEDGLKK LEASSEVPKL LEGPSKAAKL AGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-66 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA08G04140.1 |