PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G29810.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SRS
Protein Properties Length: 330aa    MW: 32381.7 Da    PI: 8.782
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G29810.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.84.9e-671002574154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqs.alsstk 90 
                       ++sCqdCGn+akkdC+h RCRtCC+srgf+CathvkstWvpaakrrerqqqlaa+ + aaa++      a+aaskr+rel  +     +++t 
  ONIVA06G29810.1 100 AGTSCQDCGNNAKKDCSHLRCRTCCRSRGFSCATHVKSTWVPAAKRRERQQQLAALFRGAAANNsaaaaaAAAASKRPRELVRTLGRlPSANTA 193
                      4579***************************************************999998888788877788899999984433320333444 PP

           DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++ +++++     ++P+e+s+eavfrcvr+++vd++++elaYqtavsigGh+fkGiL+d+G+++
  ONIVA06G29810.1 194 MVATTTSSGEGDGRFPPELSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDHGPAD 257
                      44455555666778***********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MAGFSLRGGG GGGGGGGGIG GGGGGGRGGE RSGGGGGGIG FQLWHPQQQA AAAAAAVPHT  60
SQFFSSGVAT GVVLGFSSHD GGGGGGHMGG PGGGAGGGRA GTSCQDCGNN AKKDCSHLRC  120
RTCCRSRGFS CATHVKSTWV PAAKRRERQQ QLAALFRGAA ANNSAAAAAA AAASKRPREL  180
VRTLGRLPSA NTAMVATTTS SGEGDGRFPP ELSVEAVFRC VRIGAVDEAD AELAYQTAVS  240
IGGHTFKGIL RDHGPADEAA GQLPPSSAEY HQLTGQGREE SSPAGSSEGV GGGHGAATAA  300
TSAAVLMDPY PTPIGAFAAG TQFFPHNPRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1727RGGGGGGGGGGGIGGGGGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-54SRS family protein