PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G29160.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | SBP | ||||||||
Protein Properties | Length: 475aa MW: 50714.7 Da PI: 9.0148 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.8 | 4.9e-41 | 180 | 256 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+a+eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ ONIVA06G29160.4 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 256 **************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence |
MASFGMNWNQ KSPVFWDWEN PAPFGPNTME NPKSIPHPEP RGVVVAAANH GSTNSSGGTF 60 TSSSELANGS SKSSLSASFD SSSKLGNSLE FRFASVKGHG KNMCKDGEAG RVEDSGTSPA 120 VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK SSSAASGVTC PSTVVKKVKV SQQSTQSSYC 180 QVEGCKVDLS SAREYHRKHK VCEAHSKAPK VIVSGLERRF CQQCSRFHGL AEFDQKKKSC 240 RRRLSDHNAR RRKPQQEAIS FGSSRLATMF YDARQQTDIY FGQSPFGQVR SNAISSCDNL 300 GGFKFTEAKL PWMKPMKTIG LEDLNFSTLQ MPGNVVSHTV HHHDFDGLIP FKGNTTKVLN 360 QGVDPACAVV SSNSNGAPDL RRALSLLSSD SWGPADVQAG SQVHPGGVMP PLAVAAATVT 420 APTNPVSVMH ALHPSTGGGG FWQDGDDPPP LDHASQAQAF MHPGNGSSSG YGHLH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 253 | KKKSCRRRLSDHNARRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.1 | 2e-47 | SBP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA06G29160.4 |