PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G29160.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 505aa MW: 53837.2 Da PI: 8.616

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G29160.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.4e-41	210	286	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+a+eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ ONIVA06G29160.3 210 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 286 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MAIVFIQVEY NGDNDSLSAK GAAVEILNSA MASFGMNWNQ KSPVFWDWEN PAPFGPNTME 60 NPKSIPHPEP RGVVVAAANH GSTNSSGGTF TSSSELANGS SKSSLSASFD SSSKLGNSLE 120 FRFASVKGHG KNMCKDGEAG RVEDSGTSPA VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK 180 SSSAASGVTC PSTVVKKVKV SQQSTQSSYC QVEGCKVDLS SAREYHRKHK VCEAHSKAPK 240 VIVSGLERRF CQQCSRFHGL AEFDQKKKSC RRRLSDHNAR RRKPQQEAIS FGSSRLATMF 300 YDARQQTDIY FGQSPFGQVR SNAISSCDNL GGFKFTEAKL PWMKPMKTIG LEDLNFSTLQ 360 MPGNVVSHTV HHHDFDGLIP FKGNTTKVLN QGVDPACAVV SSNSNGAPDL RRALSLLSSD 420 SWGPADVQAG SQVHPGGVMP PLAVAAATVT APTNPVSVMH ALHPSTGGGG FWQDGDDPPP 480 LDHASQAQAF MHPGNGSSSG YGHLH

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MAIVFIQVEY NGDNDSLSAK GAAVEILNSA MASFGMNWNQ KSPVFWDWEN PAPFGPNTME  60
NPKSIPHPEP RGVVVAAANH GSTNSSGGTF TSSSELANGS SKSSLSASFD SSSKLGNSLE  120
FRFASVKGHG KNMCKDGEAG RVEDSGTSPA VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK  180
SSSAASGVTC PSTVVKKVKV SQQSTQSSYC QVEGCKVDLS SAREYHRKHK VCEAHSKAPK  240
VIVSGLERRF CQQCSRFHGL AEFDQKKKSC RRRLSDHNAR RRKPQQEAIS FGSSRLATMF  300
YDARQQTDIY FGQSPFGQVR SNAISSCDNL GGFKFTEAKL PWMKPMKTIG LEDLNFSTLQ  360
MPGNVVSHTV HHHDFDGLIP FKGNTTKVLN QGVDPACAVV SSNSNGAPDL RRALSLLSSD  420
SWGPADVQAG SQVHPGGVMP PLAVAAATVT APTNPVSVMH ALHPSTGGGG FWQDGDDPPP  480
LDHASQAQAF MHPGNGSSSG YGHLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	283	KKKSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-47	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G29160.3