PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G29160.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 527aa MW: 56172.1 Da PI: 9.4419

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G29160.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.7e-41	232	308	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+a+eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ ONIVA06G29160.1 232 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 308 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MANRWLLAGR STSRGGSHPL GLTLLLLLPP PLVTVQSQAL RLTAAVEILN SAMASFGMNW 60 NQKSPVFWDW ENPAPFGPNT MENPKSIPHP EPRGVVVAAA NHGSTNSSGG TFTSSSELAN 120 GSSKSSLSAS FDSSSKLGNS LEFRFASVKG HGKNMCKDGE AGRVEDSGTS PAVAVSHGEP 180 VIGLKLGKRT YFENVCGGQN VKSSSAASGV TCPSTVVKKV KVSQQSTQSS YCQVEGCKVD 240 LSSAREYHRK HKVCEAHSKA PKVIVSGLER RFCQQCSRFH GLAEFDQKKK SCRRRLSDHN 300 ARRRKPQQEA ISFGSSRLAT MFYDARQQTD IYFGQSPFGQ VRSNAISSCD NLGGFKFTEA 360 KLPWMKPMKT IGLEDLNFST LQMPGNVVSH TVHHHDFDGL IPFKGNTTKV LNQGVDPACA 420 VVSSNSNGAP DLRRALSLLS SDSWGPADVQ AGSQVHPGGV MPPLAVAAAT VTAPTNPVSV 480 MHALHPSTGG GGFWQDGDDP PPLDHASQAQ AFMHPGNGSS SGYGHLH

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MANRWLLAGR STSRGGSHPL GLTLLLLLPP PLVTVQSQAL RLTAAVEILN SAMASFGMNW  60
NQKSPVFWDW ENPAPFGPNT MENPKSIPHP EPRGVVVAAA NHGSTNSSGG TFTSSSELAN  120
GSSKSSLSAS FDSSSKLGNS LEFRFASVKG HGKNMCKDGE AGRVEDSGTS PAVAVSHGEP  180
VIGLKLGKRT YFENVCGGQN VKSSSAASGV TCPSTVVKKV KVSQQSTQSS YCQVEGCKVD  240
LSSAREYHRK HKVCEAHSKA PKVIVSGLER RFCQQCSRFH GLAEFDQKKK SCRRRLSDHN  300
ARRRKPQQEA ISFGSSRLAT MFYDARQQTD IYFGQSPFGQ VRSNAISSCD NLGGFKFTEA  360
KLPWMKPMKT IGLEDLNFST LQMPGNVVSH TVHHHDFDGL IPFKGNTTKV LNQGVDPACA  420
VVSSNSNGAP DLRRALSLLS SDSWGPADVQ AGSQVHPGGV MPPLAVAAAT VTAPTNPVSV  480
MHALHPSTGG GGFWQDGDDP PPLDHASQAQ AFMHPGNGSS SGYGHLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	305	KKKSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-47	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G29160.1