PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G19160.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 190aa    MW: 20346.1 Da    PI: 11.1214
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G19160.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-192066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+ k +rqvtfskRr g++KKA+E+S+L +a +a++ fs+ g+++ +
  ONIVA06G19160.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASIAIVSFSKAGNVFAF 66
                     78899**************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SIAIVSFSKA  60
GNVFAFGSPS VDAVLRRHVV AGPSTSTSHA HAGGDVFADD GGDNPEVLNA LKRATDEAAA  120
EVAAEDARQS GVEGKITEAM AAGRRRFWWD AANVEALGEA ELPVFERALH KLRGAVVRRR  180
RRLAAARRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-23M-type_MADS family protein