PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G09080.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 355aa    MW: 39524.3 Da    PI: 4.3962
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G09080.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.2e-26958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien  nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  ONIVA06G09080.2  9 KRIENIQNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MGRVKLQIKR IENIQNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRIEDVLTRY INLPESDRGG YYLINMLTQL KCESDVTEDL TNTSSKAPVN SNIEELQQEI  120
RRCQHQMQLT EEQLRMFEPD PARSASMEDV EASEKFIAGI LSRVEERKRH LLCSMGSFDV  180
TASTSAMQHL YLPQQHQHGD ITDNGFGSDE VASWVSEGMP PTTSSVASIF AGTSDSMMSF  240
RDQAVYDTMR QDACVDQTVV PEMGMCHVDQ QNQSDDWQAY TSAEFLNALI PPTPFPLDDE  300
DTMGPMLASS PLLMPGIHDQ QPPEEDMATA GCSQAPANDG NGLYAAEDIA PVNVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-71MIKC_MADS family protein