PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G26860.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 346aa MW: 37432.3 Da PI: 10.5591

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G26860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.9	1.3e-13	40	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ aL++a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ st+++f +l+ ONIVA05G26860.1 40 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPELD 126 7****************************************99999999******************999886......5899999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MEVREMAVAA AAAAAASSGG GGGGLRMPPP NPNLPYREDC WSEGETEALV RAWGSRYVEL 60 NRGNLRQKQW QEVADAVNSR RGAAARRRPP RTDVQCKNRV DTLKKKYKAE RARVMPSTWS 120 FFPELDRLVG PTLSASASKR PSPSPSPVPP PPHFAMPIHP SAVRKPPSPS PSPSPPPPMA 180 LPLPSYRRGS PLPAAALIQQ EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSLSSRSG 240 NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN 300 FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MEVREMAVAA AAAAAASSGG GGGGLRMPPP NPNLPYREDC WSEGETEALV RAWGSRYVEL  60
NRGNLRQKQW QEVADAVNSR RGAAARRRPP RTDVQCKNRV DTLKKKYKAE RARVMPSTWS  120
FFPELDRLVG PTLSASASKR PSPSPSPVPP PPHFAMPIHP SAVRKPPSPS PSPSPPPPMA  180
LPLPSYRRGS PLPAAALIQQ EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSLSSRSG  240
NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN  300
FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-30	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G26860.1