PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G23940.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YC

Protein Properties

Length: 461aa MW: 51492.2 Da PI: 4.8956

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G23940.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	80.6	1.9e-25	38	139	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw ++ ie ++df +h +P+ar+kki+ +++ m++ + P++lsk celf+ el++ +w a++ +r + dia+av++t+ +df ONIVA05G23940.2 38 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPTFLSKMCELFVQELAVHAWACAQSHNRCIILDMDIAEAVASTESYDF 131 688997655669****************************************************************************** PP NF-YC 92 lvdivprd 99 lvdi ++ ONIVA05G23940.2 132 LVDILHNH 139 *98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MEKERAWRGR REQQREAMEQ TLDVHRSLRP PMPMAQQQMD EFWRDRQKEI EMTKDFSEHM 60 IPMARLKKIV SSQKGNMMMT FDMPTFLSKM CELFVQELAV HAWACAQSHN RCIILDMDIA 120 EAVASTESYD FLVDILHNHS VKQKSTPCSS TKRCRLVDQP STSHIPHQHL LPQFAPTYTL 180 AIPITPSLMP LISQCTPSSF PSLPQEKFPL MAPTPIVNRS MLFIDNIARG LGLQGNNINA 240 VANNNILDNI VGCSSPAVLA SMMNPALLGP SGPPLNPPNS QSYNYTMDII NSNDACGSNN 300 SSVIVANQAN IAPSGHFYPI ALQSSCSTFL HRNNNDTITA IPEGVDISDI MHVTSDVDAA 360 TKVFSGQEEQ NEKETNVEWH HQNEIYESID IGIINATTRD GNKCSISWDE LGMADDSLLD 420 NFLEELQVRK DDVSDTRIAF NKDPFLDDVV LSNPSTNNGN K

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MEKERAWRGR REQQREAMEQ TLDVHRSLRP PMPMAQQQMD EFWRDRQKEI EMTKDFSEHM  60
IPMARLKKIV SSQKGNMMMT FDMPTFLSKM CELFVQELAV HAWACAQSHN RCIILDMDIA  120
EAVASTESYD FLVDILHNHS VKQKSTPCSS TKRCRLVDQP STSHIPHQHL LPQFAPTYTL  180
AIPITPSLMP LISQCTPSSF PSLPQEKFPL MAPTPIVNRS MLFIDNIARG LGLQGNNINA  240
VANNNILDNI VGCSSPAVLA SMMNPALLGP SGPPLNPPNS QSYNYTMDII NSNDACGSNN  300
SSVIVANQAN IAPSGHFYPI ALQSSCSTFL HRNNNDTITA IPEGVDISDI MHVTSDVDAA  360
TKVFSGQEEQ NEKETNVEWH HQNEIYESID IGIINATTRD GNKCSISWDE LGMADDSLLD  420
NFLEELQVRK DDVSDTRIAF NKDPFLDDVV LSNPSTNNGN K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	8e-24	NF-YC family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G23940.2