PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G23940.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YC

Protein Properties

Length: 465aa MW: 51884.7 Da PI: 4.9509

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G23940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	80.6	1.9e-25	42	143	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw ++ ie ++df +h +P+ar+kki+ +++ m++ + P++lsk celf+ el++ +w a++ +r + dia+av++t+ +df ONIVA05G23940.1 42 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPTFLSKMCELFVQELAVHAWACAQSHNRCIILDMDIAEAVASTESYDF 135 688997655669****************************************************************************** PP NF-YC 92 lvdivprd 99 lvdi ++ ONIVA05G23940.1 136 LVDILHNH 143 *98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MPYIKKTRCN IIYHSEQQRE AMEQTLDVHR SLRPPMPMAQ QQMDEFWRDR QKEIEMTKDF 60 SEHMIPMARL KKIVSSQKGN MMMTFDMPTF LSKMCELFVQ ELAVHAWACA QSHNRCIILD 120 MDIAEAVAST ESYDFLVDIL HNHSVKQKST PCSSTKRCRL VDQPSTSHIP HQHLLPQFAP 180 TYTLAIPITP SLMPLISQCT PSSFPSLPQE KFPLMAPTPI VNRSMLFIDN IARGLGLQGN 240 NINAVANNNI LDNIVGCSSP AVLASMMNPA LLGPSGPPLN PPNSQSYNYT MDIINSNDAC 300 GSNNSSVIVA NQANIAPSGH FYPIALQSSC STFLHRNNND TITAIPEGVD ISDIMHVTSD 360 VDAATKVFSG QEEQNEKETN VEWHHQNEIY ESIDIGIINA TTRDGNKCSI SWDELGMADD 420 SLLDNFLEEL QVRKDDVSDT RIAFNKDPFL DDVVLSNPST NNGNK

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MPYIKKTRCN IIYHSEQQRE AMEQTLDVHR SLRPPMPMAQ QQMDEFWRDR QKEIEMTKDF  60
SEHMIPMARL KKIVSSQKGN MMMTFDMPTF LSKMCELFVQ ELAVHAWACA QSHNRCIILD  120
MDIAEAVAST ESYDFLVDIL HNHSVKQKST PCSSTKRCRL VDQPSTSHIP HQHLLPQFAP  180
TYTLAIPITP SLMPLISQCT PSSFPSLPQE KFPLMAPTPI VNRSMLFIDN IARGLGLQGN  240
NINAVANNNI LDNIVGCSSP AVLASMMNPA LLGPSGPPLN PPNSQSYNYT MDIINSNDAC  300
GSNNSSVIVA NQANIAPSGH FYPIALQSSC STFLHRNNND TITAIPEGVD ISDIMHVTSD  360
VDAATKVFSG QEEQNEKETN VEWHHQNEIY ESIDIGIINA TTRDGNKCSI SWDELGMADD  420
SLLDNFLEEL QVRKDDVSDT RIAFNKDPFL DDVVLSNPST NNGNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	7e-24	NF-YC family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G23940.1