PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G16770.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 839aa MW: 91891.3 Da PI: 6.1924

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G16770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111.7	4.4e-35	168	242	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv+gCead+ e+k yhrrh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k ONIVA05G16770.1 168 CQVPGCEADIRELKGYHRRHRVCLRCAHATAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 242 ************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence
MDAPGGGGGG GGGVDAGEPV WDWGNLLDFA VHDDDSLVLP WGDDSIGIEA DPAEAALLPP 60 APSPQPAEAE AEAAGPASLP SSMQAEGSKR RVRKRDPRLV CPNYLAGRVP CACPEIDEMA 120 AALEVEDVAT ELLAGARKKP KGAGRGSGAA VGGSGGGASR GTPAEMKCQV PGCEADIREL 180 KGYHRRHRVC LRCAHATAVM LDGVQKRYCQ QCGKFHILLD FDEDKRSCRR KLERHNKRRR 240 RKPDSKGILE KDIDDQLDFS ADGSGDGELR EENIDVTTSE TLETVLSNKV LDRETPVGSD 300 DVLSSPTCAQ PSLQIDQSKS LVTFAASVEA CLGTKQENTK LTNSPVHDTK STYSSSCPTG 360 RVSFKLYDWN PAEFPRRLRH QIFEWLSSMP VELEGYIRPG CTILTVFVAM PQHMWDKLSE 420 DTGNLVKSLV NAPNSLLLGK GAFFIHVNNM IFQVLKDGAT LTSTRLEVQS PRIHYVHPSW 480 FEAGKPIDLI LCGSSLDQPK FRSLVSFDGL YLKHDCRRIL SHETFDCIGS GEHILDSQHE 540 IFRINITTSK LDTHGPAFVE VENMFGLSNF VPILVGSKHL CSELEQIHDA LCGSSDISSD 600 PCELRGLRQT AMLGFLIDIG WLIRKPSIDE FQNLLSLANI QRWICMMKFL IQNDFINVLE 660 IIVNSLDNII GSELLSNLEK GRLENHVTEF LGYVSEARNI VDNRPKYDKQ RQVDTRWAGD 720 YAPNQPKLGI SVPLAESTGT SGEHDLHTTN AASGEEENMP LVTKALPHRQ CCHPETSARW 780 LNAASIGAFP GGAMRMRLAT TVVIGAVVCF AACVVLFHPH RVGVLAAPVK RYLSRNYSS

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence

MDAPGGGGGG GGGVDAGEPV WDWGNLLDFA VHDDDSLVLP WGDDSIGIEA DPAEAALLPP  60
APSPQPAEAE AEAAGPASLP SSMQAEGSKR RVRKRDPRLV CPNYLAGRVP CACPEIDEMA  120
AALEVEDVAT ELLAGARKKP KGAGRGSGAA VGGSGGGASR GTPAEMKCQV PGCEADIREL  180
KGYHRRHRVC LRCAHATAVM LDGVQKRYCQ QCGKFHILLD FDEDKRSCRR KLERHNKRRR  240
RKPDSKGILE KDIDDQLDFS ADGSGDGELR EENIDVTTSE TLETVLSNKV LDRETPVGSD  300
DVLSSPTCAQ PSLQIDQSKS LVTFAASVEA CLGTKQENTK LTNSPVHDTK STYSSSCPTG  360
RVSFKLYDWN PAEFPRRLRH QIFEWLSSMP VELEGYIRPG CTILTVFVAM PQHMWDKLSE  420
DTGNLVKSLV NAPNSLLLGK GAFFIHVNNM IFQVLKDGAT LTSTRLEVQS PRIHYVHPSW  480
FEAGKPIDLI LCGSSLDQPK FRSLVSFDGL YLKHDCRRIL SHETFDCIGS GEHILDSQHE  540
IFRINITTSK LDTHGPAFVE VENMFGLSNF VPILVGSKHL CSELEQIHDA LCGSSDISSD  600
PCELRGLRQT AMLGFLIDIG WLIRKPSIDE FQNLLSLANI QRWICMMKFL IQNDFINVLE  660
IIVNSLDNII GSELLSNLEK GRLENHVTEF LGYVSEARNI VDNRPKYDKQ RQVDTRWAGD  720
YAPNQPKLGI SVPLAESTGT SGEHDLHTTN AASGEEENMP LVTKALPHRQ CCHPETSARW  780
LNAASIGAFP GGAMRMRLAT TVVIGAVVCF AACVVLFHPH RVGVLAAPVK RYLSRNYSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	243	KRSCRRKLERHNKRRRRKP
2	229	241	RRKLERHNKRRRR
3	236	243	NKRRRRKP
4	237	242	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-144	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G16770.1