PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G28560.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 335aa    MW: 36922.6 Da    PI: 5.1066
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G28560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC74.91.1e-2331129297
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      +++fw      ie+++  ++  lP++r+k+i+ a e   m+sa++P++++k celf+ el lr+w+ a++ +r+ +  +dia+a+t t+ + fl
  ONIVA04G28560.1  31 MEKFWRMSqeqIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFL 124
                      78899876122555555566779*********************************************************************** PP

            NF-YC  93 vdivp 97 
                       ++v 
  ONIVA04G28560.1 125 ANVVH 129
                      99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MPIPEKDGVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNEE LILPISRVKN  60
IIHAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES  120
YHFLANVVHG HQALGSNIPE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP  180
PIGQSGTQHT TSTHVLMMQG ESIHKASKEK SPLKEVMVPT NKVGMTNSSY AVPNGGGATS  240
SKVVIDSPKG ETAQVFSSQH ACPSLEDNYV IPIPAGHGDS FRTLDEANIP QLHQEQKNFI  300
SQDAIVGENI PLNESLEKSK HKDEDLLFPD KDLPE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-18NF-YC family protein