PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G27600.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 384aa MW: 41049.8 Da PI: 9.2265

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G27600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55	2.2e-17	67	154	2	73
trihelix 2 WtkqevlaLiearremeerlrr.gk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+l Li+a+r +++r g +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ ++ ONIVA04G27600.1 67 WTLHETLILITAKRLDDDRRAGvGGaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRVAA 154 ***********966666553122345666677777777***************************************9998743 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MSGSSADPSP SASTAGAAVS PLALLRAHGH GHGHLTATPP SGATGPAPPP PSPASGSAPR 60 DYRKGNWTLH ETLILITAKR LDDDRRAGVG GAAAGGGGAG SPPTPRSAEQ RWKWVENYCW 120 KNGCLRSQNQ CNDKWDNLLR DYKKVRDYES RVAAAAAANS APLPSYWTME RHERKDCNLP 180 TNLAPEVYDA LSEVLSRRAA RRGGATIAPT PPPPPLALPL PPPPPPSPPK PLVAQQQHHH 240 HGHHHHPPPP QPPPSSLQLP PAVVAPPPAS VSAEEEMSGS SESGEEEEGS GGEPEAKRRR 300 LNRLGSSVVR SATVVARTLV ACEEKRERRH RELLQLEERR LRLEEERTEV RRQGFAGLIA 360 AVNSLSSAIH ALVSDHRSGD SSGR

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MSGSSADPSP SASTAGAAVS PLALLRAHGH GHGHLTATPP SGATGPAPPP PSPASGSAPR  60
DYRKGNWTLH ETLILITAKR LDDDRRAGVG GAAAGGGGAG SPPTPRSAEQ RWKWVENYCW  120
KNGCLRSQNQ CNDKWDNLLR DYKKVRDYES RVAAAAAANS APLPSYWTME RHERKDCNLP  180
TNLAPEVYDA LSEVLSRRAA RRGGATIAPT PPPPPLALPL PPPPPPSPPK PLVAQQQHHH  240
HGHHHHPPPP QPPPSSLQLP PAVVAPPPAS VSAEEEMSGS SESGEEEEGS GGEPEAKRRR  300
LNRLGSSVVR SATVVARTLV ACEEKRERRH RELLQLEERR LRLEEERTEV RRQGFAGLIA  360
AVNSLSSAIH ALVSDHRSGD SSGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	301	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-42	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G27600.1