PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G26660.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 415aa MW: 44907.5 Da PI: 7.8038

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G26660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	183	261	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ ONIVA04G26660.1 183 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 261 6****************************98725689***********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGN IQRDHHHHHH QQLGYNLEPS 60 SLALLPPSNA AAAAAHHATI AHASPHDLLQ FYPTSHYLAA AGGAGGGGNP YSHFTAAAAA 120 GSTFQSYYQQ PPQAAPEYYF PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH 180 PPRCQAEGCK ADLSSAKRYH RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD 240 AKKSCRKRLA DHNRRRRKSK PSDGEHSGEK RRAQANKSAA TKDKAGSSSK NAGIGDGFET 300 QLLGGAHMSK DQDQAMDLGE VVKEAVDPKG KASMQQQQQQ AHHGIHQQSH QQHGFPFPSS 360 SGSCLFPQSQ GAVSSTDTSN IAQVQEPSLA FHQQHHQHSN ILQLGQAMFD LDFDH

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGN IQRDHHHHHH QQLGYNLEPS  60
SLALLPPSNA AAAAAHHATI AHASPHDLLQ FYPTSHYLAA AGGAGGGGNP YSHFTAAAAA  120
GSTFQSYYQQ PPQAAPEYYF PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH  180
PPRCQAEGCK ADLSSAKRYH RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD  240
AKKSCRKRLA DHNRRRRKSK PSDGEHSGEK RRAQANKSAA TKDKAGSSSK NAGIGDGFET  300
QLLGGAHMSK DQDQAMDLGE VVKEAVDPKG KASMQQQQQQ AHHGIHQQSH QQHGFPFPSS  360
SGSCLFPQSQ GAVSSTDTSN IAQVQEPSLA FHQQHHQHSN ILQLGQAMFD LDFDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	272	RRRRKSKPSDGEHSGEKRR
2	254	284	RRRRKSKPSDGEHSGEKRRAQANKSAATKDK
3	255	260	RRRKSK
4	255	285	RRRRKSKPSDGEHSGEKRRAQANKSAATKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G26660.1