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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G21940.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 28973.9 Da PI: 9.3545 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.8e-32 | 16 | 65 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ ONIVA04G21940.2 16 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 65 79**********************************************95 PP | |||||||
2 | K-box | 103 | 3.8e-34 | 86 | 180 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+++l+ +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++kl ONIVA04G21940.2 86 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 179 334488899************************************************************************************9 PP K-box 99 e 99 e ONIVA04G21940.2 180 E 180 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MVDKSTKMGR GRVELKRIEN KINRQVTFSK RRNGLLKKAY ELSVLCDAEV ALIIFSSRGK 60 LYEFGSAGIN KTLEKYNSCC YNAQGSNSAL AGGEHQSWYQ EMSRLKTKLE CLQRSQRHML 120 GEDLGPLSIK ELQQLEKQLE YSLSQARQRK TQIMMEQVDD LRRKERQLGE LNKQLKNKLE 180 AEADSSNCRS AIQDSWVHGT VVSGGRVLNA QPPPDIDCEP TLQIGYYQFV RPEAANPRSN 240 GGGGDQNNNF VMGWPL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 6e-92 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G21940.2 |