PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19190.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 360aa MW: 37325 Da PI: 9.3143

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	107	183	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+ l+ +keyhrrhkvCevh+kap v+v+g+eqrfCqqCsrfh l efD++k+sCrrrLa+hnerrr+++ ONIVA04G19190.1 107 RCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRRRSN 183 6*************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEGNGCGGSG ATPRGVVGMH WAPVVTSPPS PQPPFLPPAP CRPDVQMQQQ GGLTCLKLGK 60 RPCFWGGDGA GQVAQGSGGG GGGGGGGSAD QGKRKEKAAT AVPVVPRCQV EGCDITLQGV 120 KEYHRRHKVC EVHAKAPRVV VHGTEQRFCQ QCSRFHVLAE FDDAKKSCRR RLAGHNERRR 180 RSNASEAMAR GSAHPHGMPV LGHGFPPYGL PTSSAGALSL LSSARATGPW LMPTPDISAR 240 SSAALDELIA ENRAALLSWQ FFSDRQPPPA GRPTGRSPGS ETAGGWHAHL QAPPPPPGAG 300 GQHEHQSGHV TLDLMQATTA AGGSGAPFRP VPARPAKEGG DAGCTSDAWT PSPMEGARVV

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEGNGCGGSG ATPRGVVGMH WAPVVTSPPS PQPPFLPPAP CRPDVQMQQQ GGLTCLKLGK  60
RPCFWGGDGA GQVAQGSGGG GGGGGGGSAD QGKRKEKAAT AVPVVPRCQV EGCDITLQGV  120
KEYHRRHKVC EVHAKAPRVV VHGTEQRFCQ QCSRFHVLAE FDDAKKSCRR RLAGHNERRR  180
RSNASEAMAR GSAHPHGMPV LGHGFPPYGL PTSSAGALSL LSSARATGPW LMPTPDISAR  240
SSAALDELIA ENRAALLSWQ FFSDRQPPPA GRPTGRSPGS ETAGGWHAHL QAPPPPPGAG  300
GQHEHQSGHV TLDLMQATTA AGGSGAPFRP VPARPAKEGG DAGCTSDAWT PSPMEGARVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	5e-35	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19190.1