PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G18520.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 748aa    MW: 80877 Da    PI: 6.6926
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G18520.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.21.7e-3199183187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  ONIVA04G18520.2  99 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 183
                      8*********************************************************************866665..******985 PP
2trihelix107.87.4e-34491575186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k ev+aLi++r e++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+
  ONIVA04G18520.2 491 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 575
                      8*********************************************************************8.99**********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    
MQQHQGGGSQ YGAVPPDMGP FSPTHHASAP APLPLSSRPP PAALSQPPPP QQQQQQPRTS  60
YDELAAATSA GAGGFPDDDM LGDAGGSGGG GGSGAAGNRW PREETLALIR IRSEMDATFR  120
DATLKGPLWE EVSRKLAELG YKRSAKKCKE KFENVHKYYK RTKEGRAGRQ DGKSYRFFTE  180
LEALHAAAPQ TPQPQQQQQQ QLPPVTSSAP AMHAFAPPVP APPPMSAMPP PPGPIQPAPI  240
SSAAPAVPLE LPPQPPINLQ GLSFSSMSGS ESDDESEDDE MTAETGGSQD RLGKRKRGAG  300
GKRLATFFEG LIKQVVDRQE EMQRRFLETM EKREAERTAR EEAWRRQEVA RLNREQEQLA  360
QERAAAASRD AAIISFLQRI GGQSVQVPPA ATVIQMPTPV QLQTPPPVKQ PARQHQPQPT  420
PPPPQAAPIP AAPLQQQPPQ PQHKETIHHE AVTPRSAPPT SGSSLELVPA AEQHVESGLG  480
GGEGGSASSS RWPKTEVQAL IQLRMELDMR YQETGPKGPL WEEISSGMRR LGYNRSSKRC  540
KEKWENINKY FKKVKESNKK RPEDSKTCPY FHQLDVIYRR KHLTGGGGGG ASAANVAATA  600
IEHQNPNRHE IEGKNINDND KRKNGGGGGA QVPTSNGDTA PTTATFDVDS GMKKLTGNPL  660
AVKPEDIVRE LSEQPPREFT TDETDSDDMG DDYTDDGEEG EDDGKMQYRI QFQRPNPGGA  720
NTAPPPATTP ASAVPTSTPT STFLAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150KRSAKKCKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-48Trihelix family protein