PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G16290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 797aa    MW: 81536.7 Da    PI: 7.2486
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G16290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-16519570155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  ONIVA04G16290.1 519 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 570
                      89****************988532...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG GGEAPKLENF  120
LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP  180
PQHADQGMST DASASSYACS DVLVGSCGGG GGAGGTASSH GQGLALSMST GSVAAAAGGG  240
AVVAAESSSS ENKRVDSPGG AVDVAVPRKS IDTFGQRTSI YRGVTSRKQR ILGESCMVIS  300
LVCFADWALR GLDYGGGSSD LSMLVGSSGG GRRTVGDGGG EAPKLENFLD GILFSDVHGQ  360
AAGGYLYSGS TVNGAGGYSN GGCGGGLAWA GPGAVDEHGV GGRRRRGRRR RRGRELVVGE  420
QAGGFAGRRR GRRRPEEIHR HLRAKDVYIP RCNKPRGIDG QEDMKLICGI IAVGEKAKVA  480
RGDRMSNYEK ELEEMKHMTR QEYIAHLRRN SSGFSRGASK YRGVTRHHQH GRWQARIGRV  540
AGNKDIYLGT FSTEEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSILDS STLPVGGAAR  600
RLKEAEAAAA AAGGGVIVSH LADGGVGGYY YGCGPTIAFG GGGQQPAPLA VHYPSYGQAS  660
GWCKPEQDAV IAAGHCATDL QHLHLGSGGA AATHNFFQQP ASSSAVYGNG GGGGGNAFMM  720
PMGAVVAAAD HGGQSSAYGG GDESGRLVVG YDGVVDPYAA MRSAYELSQG SSSSSVSVAK  780
AANGYPDNWS SPFNGMG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404414RRRGRRRRRGR
2405412RRGRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-54AP2 family protein