PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G12200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 417aa MW: 43939.2 Da PI: 7.0386 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.6 | 3.3e-13 | 68 | 149 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ +++g+ + s +qCk++++ l+k+yk +++ + ++++f +l+ ONIVA04G12200.1 68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 149 *************************************87888866222667**************99988876.......488888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence |
MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAASPNPGGG 60 GGGREDAWSE GATAALIDAW GERFVALGRG SLRHPQWQEV ADAVSSREGY AKAPKSDVQC 120 KNRIDTLKKK YKIERAKPAS SWQFFGRLDD LLAPTFNQKP GGNGGGGVGA SVNGRNPVPA 180 ALRVGFPQRS RTPLMPAPVS AVKRRAPSPE PSASSESSDG FPPERQPAFP PLPLPPPPNG 240 KRSRADEGRG GGGGGGGDRA QGLRELAQAI RRFGEAYERV ETAKLEQSAE MERRRLDFAS 300 ELESQRVQFF LNTQMELSQV KNHSSSPANA AAPPGATGGA GGTSRRMASV NDASASGNYH 360 RRYRVSDGGR HRHHPQPPPS RPHYQYHENN IAVAAAAAAS DGEQSDDEED DEEEESQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-39 | Trihelix family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G12200.1 |