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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G11980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 158aa MW: 18511.8 Da PI: 9.2348 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.1 | 1.1e-13 | 10 | 38 | 2 | 30 |
---SHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvL 30 rien rqv f+kRr g+lKKA+ELSvL ONIVA04G11980.1 10 RIENPVHRQVIFCKRRMGLLKKAKELSVL 38 8***************************9 PP | |||||||
2 | K-box | 58.7 | 2.5e-20 | 64 | 148 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++l+ ++ie l++ke l+ +n L+++ ONIVA04G11980.1 64 PMVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQER 148 45579**********************868**************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MARGKVQMRR IENPVHRQVI FCKRRMGLLK KAKELSVLNM EGLIERYKCN LPEAQVESTE 60 QNIPMVIQQD VLFLRREVDL LQNSLRYMYG EKDINHMNLG ELQSLESNLE VWVNNIRSTK 120 MQLMSREIEM LKNKEGILKA ANDILQERVL LAINSCIL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-36 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G11980.1 |