PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G09510.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 529aa MW: 55232.7 Da PI: 7.9189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G09510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.9	1.2e-17	144	233	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt+ + L++ ++++ e+l+rg+l++ +We+v++++ + +s +qCk+k++nl+kryk + ++ + + ++s++p+f+++e ONIVA04G09510.1 144 EWTDGAISSLLDSYTDRFEQLNRGNLRGRDWEDVAAAVsdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRLAGSGASAVSHWPWFKKME 233 5***********************************6655334446899***********888887777677888******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPPQQQAQ AFCFGDAASV AGAGAGVGPF 60 APMGQEEGNH SAERGKAAAA AAHHSKRGRD RAEEFSDGGE YCSYLNSGGG GGGAGKKGRG 120 GGGGGGGGGG VAAGSSEYRK DREEWTDGAI SSLLDSYTDR FEQLNRGNLR GRDWEDVAAA 180 VSDGQGKSSG GKSVEQCKNK IDNLKKRYKV ECQRLAGSGA SAVSHWPWFK KMEQIVGNSS 240 SPASSKALVA SDDDNKPRQP QQHSSKRHAP SGSSTPTFGG SSRLAPPSNP KWKRVLLKIG 300 GTALAGAPPQ NVDPKVIMLI AREVQVACRH GVEVSIVVGG RNIFCGDTWV SATGTDRAST 360 YSIGMMASVM NAVLLQASLE KIGVETRVQT ALMMQEVAEP YIRRRAIRHL EKGRVVIFAG 420 IGAGIGNPLF TTDTAAALRA SENVVLKGTA GDDDYGCPPR GNNNPPFEHI SFRELAARGF 480 SRMDMTAITC CQENNIPVVI FNMLEPGNIS KAIRGDQVGT LVDQSGRIT

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPPQQQAQ AFCFGDAASV AGAGAGVGPF  60
APMGQEEGNH SAERGKAAAA AAHHSKRGRD RAEEFSDGGE YCSYLNSGGG GGGAGKKGRG  120
GGGGGGGGGG VAAGSSEYRK DREEWTDGAI SSLLDSYTDR FEQLNRGNLR GRDWEDVAAA  180
VSDGQGKSSG GKSVEQCKNK IDNLKKRYKV ECQRLAGSGA SAVSHWPWFK KMEQIVGNSS  240
SPASSKALVA SDDDNKPRQP QQHSSKRHAP SGSSTPTFGG SSRLAPPSNP KWKRVLLKIG  300
GTALAGAPPQ NVDPKVIMLI AREVQVACRH GVEVSIVVGG RNIFCGDTWV SATGTDRAST  360
YSIGMMASVM NAVLLQASLE KIGVETRVQT ALMMQEVAEP YIRRRAIRHL EKGRVVIFAG  420
IGAGIGNPLF TTDTAAALRA SENVVLKGTA GDDDYGCPPR GNNNPPFEHI SFRELAARGF  480
SRMDMTAITC CQENNIPVVI FNMLEPGNIS KAIRGDQVGT LVDQSGRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-148	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G09510.1