PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA04G08920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 329aa MW: 34840.5 Da PI: 5.633 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.7 | 2.7e-27 | 16 | 101 | 1 | 78 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rWt+qe+l+Lie++r +e r r rg+ ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++ +s+sss+ ONIVA04G08920.1 16 RWTRQEILVLIEGKRVVEGRGRgRGRgggggaaAEPTKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERSLSSPSSSS 101 8*******************99533244555559********************************************98888865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence |
MSGGGEGSGR APRLPRWTRQ EILVLIEGKR VVEGRGRGRG RGGGGGAAAE PTKWAAVAEY 60 CRRHGLERGP VQCRKRWSNL AGDYKKIREW ERSLSSPSSS SAAAGMGKEV SFWAMRNDAR 120 RERRLPGFFD REVYDILEGR GGGNAAAAAA AGKEGEEEKA AVFDSGRAAA GGGGGGGDDG 180 LFSSSEEEED DDEATPPATT PAAAPAPPPA PAPAVPVLTS EKKSDPPRQD ASEQAGTSRA 240 KQPEQIVEDS PAQGAHKRQR SDDASGEAPD LQGQLIEILD RSSRMVAAQL EAQNINCQLD 300 REQRKDQVSS LLGVLGKVAD ALYRIADKM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33550.1 | 9e-46 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA04G08920.1 |