PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G08300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 73aa MW: 8218.59 Da PI: 9.7172 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.6 | 1.1e-15 | 11 | 53 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 rie+ +r + f kR++g+ KKAeEL vLCda v +++s +g ONIVA04G08300.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLSCSG 53 8**************************************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence |
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSGDDANPHH 60 FAAPATHLEL LFH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 1e-14 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G08300.1 |