PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G01430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20159.1 Da PI: 9.2906 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.9 | 2.2e-17 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i n r v fskRr+ ++KKA+ELS+LC+++vav ++s+ gk ONIVA04G01430.1 9 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSPAGK 53 6899**************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MRRGKVKIKP IANRKARDVC FSKRRQVVIK KANELSILCG VNVAVAVLSP AGKPFFFGCP 60 TVQAVTRRLL GVGPSNPTMG DGGNGDETDI VHELNLKYQK LQQENEVEKK KNQRGQDVRL 120 ASDVNALGLH ELEAFDSNFN VIDDIVDSND VVKNAKQTAE PQTQMSVALT LQFMLDGQSI 180 APSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-20 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G01430.1 |