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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G43670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28643.4 Da PI: 5.2341 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.8 | 8.9e-26 | 18 | 68 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s ONIVA03G43670.1 18 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 68 79***********************************************96 PP | |||||||
2 | K-box | 58.9 | 2.1e-20 | 89 | 179 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslke.LqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ e++ e+++L++ei++L+ ++R+ GedL+s s + L qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++ ONIVA03G43670.1 89 TNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDaLSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMMS 179 456678999****************************97655*******************************************988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MDRRRGEVAM GRGKIEMKRI EDATRRQVTF SKRRAGFLKK ANELAVLCDA QVGVVVFSDK 60 GKLFDFCSPP VICFTVMRSP PENTRLQETN RDDEQMVMEI TRLRNEIDQL EASLRRQTGE 120 DLSSVSTVDA LSQLQLQLES SLSKVHARKD ELMSQQLEDM RRMHQTVHEQ NNFLCRMMSE 180 NWHSENWQSP GSGEASAMEA LTMLPPPAAA TTAAEAFNCF FPEEEKGVAA SSTLLQLWPQ 240 PHDGDQPDLR LW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-36 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G43670.1 |