PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G29760.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 342aa MW: 36590.6 Da PI: 6.5258

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G29760.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.7	6.4e-18	41	108	2	68
trihelix 2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 Wt e+++L+ea++++ + r ++ + ++W++v +++++rg++rs++qC+++w+nl ++ykk++++e ONIVA03G29760.1 41 WTLPETMLLVEAKKRVSDGRRpAADQGLARWRWVEDYCWRRGCRRSQNQCNDRWDNLMRDYKKVRAHE 108 ***********99988888357899***********************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDADVLLGQE EDEEAMNAAM AASTAGSAMA AAAREYRRGN WTLPETMLLV EAKKRVSDGR 60 RPAADQGLAR WRWVEDYCWR RGCRRSQNQC NDRWDNLMRD YKKVRAHELA AGGGGGPAES 120 YWVMGRTERK EKGLPANLLR EIYDAMGEVV ERRPMSSGGG GGGAVFLAGA SSSGSGGLAD 180 VPAMAMQASP LAQLLPRPLE ATANCSSGSP ERKRRRPSLD NEPPGGSTPP ATTGRQGHQE 240 HDDDDDEYAH HGADESSDDD GGLGGAIGRC AAILSVALEN REASEERRHR EVVAAEERRG 300 RARQARREAG EQCMAGLAAA VSQLAGSMLA LAAKRRGPAA PK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDADVLLGQE EDEEAMNAAM AASTAGSAMA AAAREYRRGN WTLPETMLLV EAKKRVSDGR  60
RPAADQGLAR WRWVEDYCWR RGCRRSQNQC NDRWDNLMRD YKKVRAHELA AGGGGGPAES  120
YWVMGRTERK EKGLPANLLR EIYDAMGEVV ERRPMSSGGG GGGAVFLAGA SSSGSGGLAD  180
VPAMAMQASP LAQLLPRPLE ATANCSSGSP ERKRRRPSLD NEPPGGSTPP ATTGRQGHQE  240
HDDDDDEYAH HGADESSDDD GGLGGAIGRC AAILSVALEN REASEERRHR EVVAAEERRG  300
RARQARREAG EQCMAGLAAA VSQLAGSMLA LAAKRRGPAA PK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	216	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-41	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G29760.1