PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G25700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27541.9 Da PI: 9.9342 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.5e-16 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri n+ +r tf kR++g++KKA+EL +LC ++ +++++++ ONIVA03G25700.1 10 RIINDAKRRATFKKRLKGLMKKASELATLCSVDTCLMVYGE 50 899************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MARNKVKLQR IINDAKRRAT FKKRLKGLMK KASELATLCS VDTCLMVYGE GEAQATVVWP 60 SESEVMRVLE RFKALPQLDK YKKMTDLEGF IQERIDKLQE QLDKVRRDAD ESETKLLLIE 120 ALEGRRPGLE GITIEQLTSL GWLVDARLNI VNDQLQKLHE QGLLPAPVSL PTMGVLPYTT 180 AGYTVAQEAP IQRGGWLMGV VRGIGSLGYS LFRRSGRSNT AGPSGDMVQP FNIGAGSSLA 240 NQGISFPPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-30 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G25700.1 |