PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G25220.6

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 383aa MW: 41678.4 Da PI: 7.1972

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G25220.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.7	2.5e-07	121	142	1	22
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + ONIVA03G25220.6 121 SQYRGVTFYRRTGRWESHIWAY 142 78*****************984 PP
2	AP2	42.7	1.4e-13	194	244	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g ONIVA03G25220.6 194 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 244 89******.7**...5...334336******99********99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSP PVMTRQLFPS 60 PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPAGGK KSRRGPRSRS 120 SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQM RNWTKEEFVH 180 ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI 240 RFNGREAVTN FDPSSYDGDV LPETDNEVVD GDIIDLNLRI SQPNVHELKS DGTLTGFQLN 300 CDSPEASSSV VTQEVPMEKR PVLGPQSFPT SWSWQMQGSP LPLLPTAASS GFSTGTVADA 360 ARPPSSRPHP FPGHHQFYFP PTT

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSP PVMTRQLFPS  60
PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPAGGK KSRRGPRSRS  120
SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQM RNWTKEEFVH  180
ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI  240
RFNGREAVTN FDPSSYDGDV LPETDNEVVD GDIIDLNLRI SQPNVHELKS DGTLTGFQLN  300
CDSPEASSSV VTQEVPMEKR PVLGPQSFPT SWSWQMQGSP LPLLPTAASS GFSTGTVADA  360
ARPPSSRPHP FPGHHQFYFP PTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-75	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G25220.6