![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA03G25220.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 417aa MW: 45450.7 Da PI: 7.6339 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.5 | 2.8e-07 | 121 | 142 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + ONIVA03G25220.5 121 SQYRGVTFYRRTGRWESHIWAY 142 78*****************984 PP | |||||||
2 | AP2 | 42.5 | 1.6e-13 | 194 | 244 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g ONIVA03G25220.5 194 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 244 89********.7******...5...334336**********99**********99987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 417 aa Download sequence |
MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSP PVMTRQLFPS 60 PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPAGGK KSRRGPRSRS 120 SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQM RNWTKEEFVH 180 ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEIE AARAYDRAAI 240 RFNGREAVTN FDPSSYDGDV LPETDNEVVD GDIIDLNLRI SQPNVHELKS DGTLTGFQLN 300 CDSPEASSSV VTQPISPQWP VLPQGTSMSQ HPHLYASPCP GFFVNLREVP MEKRPVLGPQ 360 SFPTSWSWQM QGSPLPLLPT AASSGFSTGT VADAARPPSS RPHPFPGHHQ FYFPPTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-78 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA03G25220.5 |