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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA03G21190.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 327aa MW: 36049.3 Da PI: 6.4242 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 63.4 | 5.3e-20 | 32 | 116 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e
ONIVA03G21190.1 32 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 116
*************************************999987777889*****************988776664......68*******8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 327 aa Download sequence |
MAQEAASAAA AAAGEEGALP QRRRKSAPGQ PWAHMETMHL LDAYEERWTR LRRGQLKAQQ 60 WEEVAADVAA RCAASGAALR KTGTQCRHKL EKLRKRYRIE GARPVTSLWP YFRRMERLER 120 GPLPVSSAFP PPPPAASPPA AASDEDDEDD DDDEEDDEEE EEVEEPIPRN NTRSINGILR 180 DSGGGGGGGG GGGFSGFAPR PPPQQPPPSF AMLSTAPPRK RVPYEAFQAK VAMADKVKEE 240 EPPPVATRPG GGTNEQLSAV LRDFGQGIMR LERRRMEMQW EIDRGWKETE ARHNRMLLDA 300 QRHLHEALAA TPPPLKKARR EHGGDGS |
| Nucleic Localization Signal ? help Back to Top | |||
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| No. | Start | End | Sequence |
| 1 | 21 | 26 | QRRRKS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G44730.1 | 7e-19 | Trihelix family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA03G21190.1 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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