PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G19920.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 787aa MW: 86986 Da PI: 8.5211

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G19920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45	2.9e-14	719	775	25	86
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 k ++ lWee+s+ m ++g++r+p qCk+ w +l ++y++ k+ e++ ++t+pyf +++ ONIVA03G19920.1 719 KGRMVLWEEISSSMLSQGISRTPAQCKSLWTSLVQKYEESKKDEES-----VKTWPYFLDMD 775 567889**********************************9998.....689****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence
MVALASLSSL SPCGLARRRS ASSAASISCC AAPPPPSAKG SQESRTPRRR VRKTEGATKS 60 LEDSVKRKME QFYEGLDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPDFDEF 120 GVQKIIPDTT FIKKWSHKIE AVIITHGHED HIGALPWVIP ALDSSTPIFA SSFTMELIKR 180 RLKEFGIFLS SRLKVFRVRK RFQAGPFEVE PLRVTHSIPD CCGLVLRCAD GIIFHTGDWK 240 IDESPVDGKI FDRQALEELS KEGVTLMMSD STNVLSPGRS ISESVVAGSL LRHISEAKGR 300 VITTQFASNI HRIGSIKAAA DLTGRKLVFV GMSLRTYLDA AFRDGKSPID PSTLVKVEDM 360 DAYAPNDLLV VTTGSQAEPR AALNLASFGG SHALKLSKED VLLYSAKVIP GNESRVMKML 420 NRLTELGPKI VMGKDAGLHT SGHAYHDELE EVLQIVKPQH FLPVHGELLF LKEHELLGRS 480 TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF VALGKEDLRL MYSDGDKAFG TSTDLCIDER 540 LRIASDGVIF VSMEIFRPQK ELASSQSGLK GKFKITTRCL WLDNGRLLDA LYKAAYAALS 600 SCPVNCPLSH MERMVSEILR KMAFEQEFRS LEESDKSRPE NTEGEAKENL PDVLRTTRDD 660 ATTSSNGEAF FSSDLHKPKT LEHFWDSFKS PTAVKIARIV NGSAQGSKSK IGKISITVKG 720 RMVLWEEISS SMLSQGISRT PAQCKSLWTS LVQKYEESKK DEESVKTWPY FLDMDRVLSS 780 QGEMATQ

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence

MVALASLSSL SPCGLARRRS ASSAASISCC AAPPPPSAKG SQESRTPRRR VRKTEGATKS  60
LEDSVKRKME QFYEGLDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPDFDEF  120
GVQKIIPDTT FIKKWSHKIE AVIITHGHED HIGALPWVIP ALDSSTPIFA SSFTMELIKR  180
RLKEFGIFLS SRLKVFRVRK RFQAGPFEVE PLRVTHSIPD CCGLVLRCAD GIIFHTGDWK  240
IDESPVDGKI FDRQALEELS KEGVTLMMSD STNVLSPGRS ISESVVAGSL LRHISEAKGR  300
VITTQFASNI HRIGSIKAAA DLTGRKLVFV GMSLRTYLDA AFRDGKSPID PSTLVKVEDM  360
DAYAPNDLLV VTTGSQAEPR AALNLASFGG SHALKLSKED VLLYSAKVIP GNESRVMKML  420
NRLTELGPKI VMGKDAGLHT SGHAYHDELE EVLQIVKPQH FLPVHGELLF LKEHELLGRS  480
TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF VALGKEDLRL MYSDGDKAFG TSTDLCIDER  540
LRIASDGVIF VSMEIFRPQK ELASSQSGLK GKFKITTRCL WLDNGRLLDA LYKAAYAALS  600
SCPVNCPLSH MERMVSEILR KMAFEQEFRS LEESDKSRPE NTEGEAKENL PDVLRTTRDD  660
ATTSSNGEAF FSSDLHKPKT LEHFWDSFKS PTAVKIARIV NGSAQGSKSK IGKISITVKG  720
RMVLWEEISS SMLSQGISRT PAQCKSLWTS LVQKYEESKK DEESVKTWPY FLDMDRVLSS  780
QGEMATQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G19920.1