PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G11500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 158aa MW: 17354.8 Da PI: 9.9128 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.9 | 6.1e-14 | 20 | 57 | 6 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k r fskR ++i+ KA+EL +LC++ vav+ +s++ ONIVA03G11500.1 20 KKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPN 57 6678999*****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MVKCRARTTR KKIEIKRGDK KVRDACFSKR HTTIFNKANE LAILCGVMVA VVFVSPNANG 60 GIFSFGYPSV SSVANRFLAN APNNTSVSSS TQSGRDVEIH ELEREERELK EHLQASTDQN 120 KLLQEAIAAR DGGQLMLLLQ SDCSELGPKG LVRGGTKY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-13 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G11500.1 |