PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G11340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YC | ||||||||
Protein Properties | Length: 268aa MW: 28396.9 Da PI: 5.5297 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 169.3 | 4.5e-53 | 67 | 172 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+f ONIVA03G11340.1 67 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVF 160 89*****997665555689*************************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdivpr+e ONIVA03G11340.1 161 DFLVDIVPREEA 172 *********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MWSNEALEHS THSYKSTVIK VTMDNQQLPY AGQPAAAGAG APVPGVPGAG GPPAVPHHHL 60 LQQQQAQLQA FWAYQRQEAE RASASDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK 120 ACELFILELT IRSWLHAEEN KRRTLQRNDV AAAIARTDVF DFLVDIVPRE EAKEEPGSAL 180 GFAAGGPAGA VGAAGPAAGL PYYYPPMGQP APMMPAWHVP AWDPAWQQGA APDVDQGAAG 240 SFSEEGQQGF AGHGGAAAGF PPAPPSSE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | RRTLQRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-63 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G11340.1 |