PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G05480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 546aa    MW: 58132.6 Da    PI: 7.6081
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G05480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11252308155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  ONIVA03G05480.1 252 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 308
                      789******************333.44555535555.779999**************98 PP

2AP246.31e-14353402355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ONIVA03G05480.1 353 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 402
                      9***************988532...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MDMNSGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD  60
APDWRHAEAK DPKLEDFMSV SYSNKSSSNL YGSSSSSSCG HADQIKYHHV HDVQAFSTPY  120
FYGHGGSGVG IDINMNAPPA GCTGVLPDHR PPPPQQDHIF LPPHGQYFLG PPNPMAPAPM  180
YNAGGGGGGV VDGSMSISGI KSWLRQAMYV PERSAAALSL SVPAAPPSEA PLPPAAMPVV  240
RKPAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD KEEKAARAYD  300
LAALKYWGPT THINFPLSTY EKELEEMKHM TRQEFIAHLR RNSSGFSRGA SMYRGVTRHH  360
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ISKYDVKRIC  420
SSTHLIGGDL ACRRSPTRML PPDAPAGAAG VDVVVAPGDH QQISVGGGGA SDNSDTASDG  480
HRGAHLLHGL QYAHAMKFEA GESSGGGGGD GATTNWMAAA AATARPVAGI PTTVHHQLPV  540
FALWND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-113AP2 family protein