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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G05480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 546aa MW: 58132.6 Da PI: 7.6081 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.7 | 1e-11 | 252 | 308 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g ONIVA03G05480.1 252 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 308 789******************333.44555535555.779999**************98 PP | |||||||
2 | AP2 | 46.3 | 1e-14 | 353 | 402 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g ONIVA03G05480.1 353 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 402 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence |
MDMNSGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD 60 APDWRHAEAK DPKLEDFMSV SYSNKSSSNL YGSSSSSSCG HADQIKYHHV HDVQAFSTPY 120 FYGHGGSGVG IDINMNAPPA GCTGVLPDHR PPPPQQDHIF LPPHGQYFLG PPNPMAPAPM 180 YNAGGGGGGV VDGSMSISGI KSWLRQAMYV PERSAAALSL SVPAAPPSEA PLPPAAMPVV 240 RKPAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD KEEKAARAYD 300 LAALKYWGPT THINFPLSTY EKELEEMKHM TRQEFIAHLR RNSSGFSRGA SMYRGVTRHH 360 QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ISKYDVKRIC 420 SSTHLIGGDL ACRRSPTRML PPDAPAGAAG VDVVVAPGDH QQISVGGGGA SDNSDTASDG 480 HRGAHLLHGL QYAHAMKFEA GESSGGGGGD GATTNWMAAA AATARPVAGI PTTVHHQLPV 540 FALWND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-113 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G05480.1 |