PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G01170.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 727aa MW: 76881.4 Da PI: 7.1004

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G01170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.9	4.4e-31	66	150	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ +t+++f++lea ONIVA03G01170.1 66 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 150 8******************************************************************97..77778****985 PP
2	trihelix	107.8	6.9e-34	423	508	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+e+e+r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a ONIVA03G01170.1 423 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 508 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MQQPGMPPFS AAGGEGAPSP ISSRPPPPEQ AAAAAAEEQL NGSSLEHDGV LGGEEGDRGG 60 SSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAEMGYKR SAKKCREKFE 120 NVDKYYKRTK DGRAGRGDGK TYRFFTELEA LHGAAAATAR PPPVSLAPAP VAVAPPATPA 180 GLSALRVHAS PPPPPVKQHA APPPPVMDVA ACVMTMDDVS FSSGSDTEET AEEGGKRKRR 240 GGGGIGGGGG GGKAMRMFEG LMRQVMERQE AMQQRLLEAI ERRDQERMIR EEAWRRQEVA 300 RLAREQDALA QERAIAASRD AAVISFIQRV TGQSIAAVPP PPLQPTPVAS AAPPPPPQHH 360 HQQTPPPIQV QPHHIMPMTP QPQLQPPQPQ SKEANTVVRA APPPQEQHDT AASGGGGGAS 420 SSRWPKAEVH ALIQLRTELE TRYQDSGPKG PLWEDISAGM RRLGYSRSSK RCKEKWENIN 480 KYFKKVKESN KKRPEDSKTC PYYHQLDALY RTKAANAAAA ASASPAPATT TVLAPVPLSQ 540 TPPHVDHGGS NGNGNGWASA NNGGGGSCSG GMQTKASNNG TATAGGLPVV SVAGGNGNGN 600 GVAATTDNKG SKQVPVAKET AGQRQPQPLA MNHNYGNDRM ADDMDSDSMD DDDDDEFDDD 660 ENDDDDIGGG KMQVQYETSS HFQRPQLQNQ NVVVGRPNAS GGGAPTTPAG PPPPAATSGT 720 SFLACVQ

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MQQPGMPPFS AAGGEGAPSP ISSRPPPPEQ AAAAAAEEQL NGSSLEHDGV LGGEEGDRGG  60
SSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAEMGYKR SAKKCREKFE  120
NVDKYYKRTK DGRAGRGDGK TYRFFTELEA LHGAAAATAR PPPVSLAPAP VAVAPPATPA  180
GLSALRVHAS PPPPPVKQHA APPPPVMDVA ACVMTMDDVS FSSGSDTEET AEEGGKRKRR  240
GGGGIGGGGG GGKAMRMFEG LMRQVMERQE AMQQRLLEAI ERRDQERMIR EEAWRRQEVA  300
RLAREQDALA QERAIAASRD AAVISFIQRV TGQSIAAVPP PPLQPTPVAS AAPPPPPQHH  360
HQQTPPPIQV QPHHIMPMTP QPQLQPPQPQ SKEANTVVRA APPPQEQHDT AASGGGGGAS  420
SSRWPKAEVH ALIQLRTELE TRYQDSGPKG PLWEDISAGM RRLGYSRSSK RCKEKWENIN  480
KYFKKVKESN KKRPEDSKTC PYYHQLDALY RTKAANAAAA ASASPAPATT TVLAPVPLSQ  540
TPPHVDHGGS NGNGNGWASA NNGGGGSCSG GMQTKASNNG TATAGGLPVV SVAGGNGNGN  600
GVAATTDNKG SKQVPVAKET AGQRQPQPLA MNHNYGNDRM ADDMDSDSMD DDDDDEFDDD  660
ENDDDDIGGG KMQVQYETSS HFQRPQLQNQ NVVVGRPNAS GGGAPTTPAG PPPPAATSGT  720
SFLACVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	253	RGGGGIGGGGGGGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-47	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G01170.1